The Biochemical Abstract Machine BIOCHAM 4

version 4.4.7 March 2020

EP Lifeware, Inria Saclay - Ile de France
http://lifeware.inria.fr/biocham4/
https://gitlab.inria.fr/lifeware/biocham
developpers mailing list: biocham@inria.fr

Biocham logo

Biocham 4 was first released in September 2017.

Biocham 4 is a complete rewriting of Biocham 3 for easier maintenance. It integrates new features, in particular concerning the synthesis of reaction systems, robustness optimisation and influence systems. For the sake of reproducible research, Biocham 3 is still active on http://lifeware.inria.fr/biocham3 but no longer maintained. Biocham 0 was first released in 2002.

Overview

The Biochemical Abstract Machine (Biocham) is a modelling environment for systems biology and synthetic biology.

Biocham is mainly composed of :

Biocham is a free software protected by the GNU General Public License GPL version 2. This is an Open Source license that allows free usage of this software.

Feedback on the use of Biocham in applications, research or teaching are particularly welcomed.

Demonstrations

Documentation

Unique features

Biocham implements some unique features for:

Download, Installation and Online Notebook Servers

Feedback and bug reports:

https://gitlab.inria.fr/lifeware/biocham/issues or mail to biocham@inria.fr