Publications

Sarah Keating Et Al (2020). SBML Level 3: an extensible format for the exchange and reuse of biological models. Molecular Systems Biology, 16 (8):1-21.

Sara Sadat Aghamiri Et Al (2020). Automated inference of Boolean models from molecular interaction maps using CaSQ. Bioinformatics, 36 (16):4473-4482.

Julien Martinelli, Jeremy Grignard, Sylvain Soliman, François Fages (2019). On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics. In Luca Bortolussi, Guido Sanguinetti, editor, CMSB 2019 - 17th Computational Methods in Systems Biology, LNCS, Springer-Verlag.

Julien Martinelli, Jeremy Grignard, Sylvain Soliman, François Fages (2019). A Statistical Unsupervised Learning Algorithm for Inferring Reaction Networks from Time Series Data. In ICML 2019 - Workshop on Computational Biology.

François Fages, Thierry Martinez, David a Rosenblueth, Sylvain Soliman (2018). Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors. IEEE/ACM Transactions on Computational Biology and Bioinformatics, PP (99):1-14.

Adrien Baudier, François Fages, Sylvain Soliman (2018). Graphical Requirements for Multistationarity in Reaction Networks and their Verification in BioModels. Journal of Theoretical Biology, 459:79–89.

François Fages, Sylvain Soliman (2018). On Robustness Computation and Optimization in BIOCHAM-4. In 16th Int. Conf. on Computational Methods in Systems Biology.

Vidisha Singh Et Al (2018). Executable Disease Networks: Adding dynamics to molecular maps. In ECCB 2018 - 17th European Conference on Computational Biology.

Arthur Carcano, François Fages, Sylvain Soliman (2017). Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data. In J. Feret, H. Koeppl, editor, CMSB'17 - 15th International Conference on Computational Methods for Systems Biology, pages 74-90.

Pauline Traynard, Celine Feillet, Sylvain Soliman, Franck Delaunay, François Fages (2017). Model-based Investigation of the Circadian Clock and Cell Cycle Coupling in Mouse Embryonic Fibroblasts: Prediction of RevErb-α Up-regulation During Mitosis. In Dynamics Days 2017 - XXXVII Dynamics Days Europe International Conference.