Sylvain Soliman's Den
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Sylvain Soliman
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On BIOCHAM Symbolic Computation Pipeline for Compiling Mathematical Functions into Biochemistry
MetaLo: metabolic analysis of Logical models extracted from molecular interaction maps
Scalable Enumeration of Trap Spaces in Boolean Networks via Answer Set Programming
Trap spaces of Boolean networks are conflict-free siphons of their Petri net encoding
Efficient Enumeration of Fixed Points in Complex Boolean Networks Using Answer Set Programming
Hybrid computational modeling highlights reverse warburg effect in breast cancer-associated fibroblasts
A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint
Metabolic Reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: a Hybrid Modeling Approach
Minimal trap spaces of Logical models are maximal siphons of their Petri net encoding
Symbolic Methods for Biological Networks D2.1 Report on Scalable Methods for Tropical Solutions (T1.2)
A Polynomialization Algorithm for Elementary Functions and ODEs, and their Compilation into Chemical Reaction Networks
Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs
Graphical Conditions for Rate Independence in Chemical Reaction Networks
On the Complexity of Quadratization for Polynomial Differential Equations
On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics
A Statistical Unsupervised Learning Algorithm for Inferring Reaction Networks from Time Series Data
Graphical Requirements for Multistationarity in Reaction Networks and their Verification in BioModels
Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors
On Robustness Computation and Optimization in BIOCHAM-4
Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data
Model-based Investigation of the Circadian Clock and Cell Cycle Coupling in Mouse Embryonic Fibroblasts: Prediction of RevErb-α Up-regulation During Mitosis
A structural perspective on the dynamics of biochemical systems
Model-based investigation of the circadian clock and cell cycle coupling in mouse embryonic fibroblasts: Prediction of RevErb-α up-regulation during mitosis
Influence Systems vs Reaction Systems
On Enumerating Minimal Siphons in Petri nets using CLP and SAT solvers: Theoretical and Practical Complexity
Model-based Investigation of the Effect of the Cell Cycle on the Circadian Clock through Transcription Inhibition during Mitosis
Inferring reaction systems from ordinary differential equations
Search by Constraint Propagation
Hybrid Simulations of Heterogeneous Biochemical Models in SBML
A constraint solving approach to model reduction by tropical equilibration
Trace Simplifications preserving Temporal Logic Formulae with Case Study in a Coupled Model of the Cell Cycle and the Circadian Clock (Best Student Paper Prize)
On the subgraph Epimorphism Problem
A stronger necessary condition for the multistationarity of chemical reaction networks
A Constraint Solving Approach to Tropical Equilibration and Model Reduction
On the Hybrid Composition and Simulation of Heterogeneous Biochemical Models
Solving Subgraph Epimorphism Problems using CLP and SAT
Invariants and Other Structural Properties of Biochemical Models as a Constraint Satisfaction Problem
A Boolean Model for Enumerating Minimal Siphons and Traps in Petri Nets
Inferring Reaction Models from ODEs
Reifying Global Constraints
Automatic Curation of SBML Models based on their ODE Semantics
Un modèle booléen pour l'énumération des siphons et des pièges minimaux dans les réseaux de Petri
Continuous valuations of temporal logic specifications with applications to parameter optimization and robustness measures
Design, optimization and predictions of a coupled model of the cell cycle, circadian clock, DNA repair system, irinotecan metabolism and exposure control under temporal logic constraints
A Unique Transformation from Ordinary Differential Equations to Reaction Networks
Steady-state Solution of Biochemical Systems, Beyond S-systems via T-invariants
SBGN support in BIOCHAM
A graphical method for reducing and relating models in systems biology
Dynamics of the interlocked positive feedback loops explaining the robust epigenetic switching in Candida albicans
Model-based Predictions of the Influence of Circadian Clock Genes Knock-Outs on the Cell Cycle
On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle
On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle
A general computational method for robustness analysis with applications to synthetic gene networks
Modelling Biochemical Reaction Networks with BIOCHAM Extracting Qualitative and Quantitative Information from the Structure
Model Revision from Temporal Logic Properties in Computational Systems Biology
On a Continuous Degree of Satisfaction of Temporal Logic Formulae with Applications to Systems Biology
Abstract interpretation and types for systems biology
Formal Cell Biology in Biocham
From reaction models to influence graphs and back: a theorem
Closures and Modules Within Linear Logic Concurrent Constraint Programming
Langages formels dans la machine abstraite biochimique BIOCHAM
Proceedings of CSCLP 2007: Annual ERCIM Workshop on Constraint Solving and Constraint Logic Programming
Coupling the Cell cycle and the Circadian Cycle
Machine Learning Biochemical Networks from Temporal Logic Properties
On Internalizing Modules as Agents in Concurrent Constraint Programming
BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge
A Machine Learning approach to Biochemical Reaction Rules Discovery
Learning Transition Rules from Temporal Logic Properties
Apprentissage de règles de réactions biochimiques à partir de propriétés en logique temporelle
Machine Learning Bio-molecular Interactions from Temporal Logic Properties
The Biochemical Abstract Machine BIOCHAM
CLPGUI: A Generic Graphical User Interface for Constraint Logic Programming
Modelling and Querying Interaction Networks in the Biochemical Abstract Machine BIOCHAM
La programmation par contraintes
Pi-calculus and LCC, a Space Odyssey
Concurrent constraint programming and linear logic
Linear Concurrent Constraint Programming: Operational and Phase Semantics
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