Publications

Van-Giang Trinh, Belaid Benhamou, Kunihiko Hiraishi, Sylvain Soliman (2022). Minimal trap spaces of Logical models are maximal siphons of their Petri net encoding. In Ion Petre, Andrei Păun, editor, CMSB 2022 - International Conference on Computational Methods in Systems Biology, volume 13447 of Lecture Notes in Computer Science, pages 158–176, Springer.

Anna Niarakis Et Al (2022). Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology. Briefings in Bioinformatics, 23 (4):1-11.

Christoph Lüders, Eléonore Bellot, François Fages, Ovidiu Radulescu, Sylvain Soliman (2022). Symbolic Methods for Biological Networks D2.1 Report on Scalable Methods for Tropical Solutions (T1.2). Research Report.

Anna Niarakis Et Al (2021). Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings in Bioinformatics, 22 (2):1848–1859.

Marek Ostaszewski Et Al (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10):e10387.

Mathieu Hemery, François Fages, Sylvain Soliman (2021). Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs. In CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology.

Mathieu Hemery, François Fages, Sylvain Soliman (2021). A Polynomialization Algorithm for Elementary Functions and ODEs, and their Compilation into Chemical Reaction Networks. In CASC'21 - Computer Algebra in Scientific Computing..

Julien Martinelli Et Al (2021). Model learning to identify systemic regulators of the peripheral circadian clock. Bioinformatics, 37 (Supplement_1):9.

Mathieu Hemery, François Fages, Sylvain Soliman (2020). On the Complexity of Quadratization for Polynomial Differential Equations. In CMSB 2020 - 18th International Conference on Computational Methods in Systems Biology.

Elisabeth Degrand, François Fages, Sylvain Soliman (2020). Graphical Conditions for Rate Independence in Chemical Reaction Networks. In CMSB 2020 - 18th International Conference on Computational Methods in Systems Biology.